LEE'S RESEARCH GROUP - Publications

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The work at ISU

Book Chapter

* "Hybrid MS-based imaging of plant metabolites", Andrew R. Korte, Gargey Yagnik and Young Jin Lee, an invited chapter to 'Mass Spectrometry Imaging of Small Molecules' edited by Lin He, a series of 'Methods in Molecular Biology', published by Humana Press, USA (part of the Springer publishing group), in preparation, to be printed in Aug, 2013.

Published

45. "Molecular Characterization of Nitrogen-containing Species in Switchgrass Bio-oils at Various Harvest Times", D. Paul Cole, Erica A. Smith, Dustin Dalluge, Danielle M. Wilson, Emily A. Heaton, Robert C. Brown, Young Jin Lee*, accepted to Fuel on Apr 24, 2013.
44. "Multiplex Mass Spectrometric Imaging with Polarity Switching for Concurrent Acquisition of Positive and Negative Ion Images", Andrew R. Korte, Young Jin Lee*, J. Am. Soc. Mass Spectrom, 2013, 24:949-955.
43. "High-throughput Analysis of Algal Crude Oils using High Resolution Mass Spectrometry", Young Jin Lee*, Rachael C. Leverence, Erica A. Smith, Justin S. Valenstein, Kapil Kandel, Brian G. Trewyn, Lipids, 2013, 48:297-305.
42. "Multiplex Mass Spectrometry Imaging for Latent Fingerprints", Gargey B. Yagnik, Andrew R. Korte, Young Jin Lee, J. Mass Spectrom., 2013, 48, 100-104.
41. "Gas Chromatography-High Resolution Tandem Mass Spectrometry using GC-APPI-LIT Orbitrap for Complex Volatile Compounds Analysis", Young-Jin Lee*, Erica A. Smith, Jihyun Jun, Mass Spectrom. Letters, 2012, 3, 29-38 (invited article).
40. "Bio-Oil Analysis Using Negative Electrospray Ionization: Comparative Study of High Resolution Mass Spectrometers and Phenolic vs. Sugaric Components", Erica A. Smith, Soojin Park, Adam T. Klein, and Young Jin Lee, Energy & Fuels, 2012, 26(6), 3796-3802.
39. "High-Resolution Mass Spectrometric Characterization of Molecules on Biochar from Pyrolysis and Gasification of Switchgrass", D. Paul Cole, Erica A. Smith, Young Jin Lee, Energy & Fuels, 2012, 26(6), 3803-3809.
38. "Spatial mapping of lipids at cellular resolution in embryos of Gossypium hirsutum, L.", Patrick J. Horn, Andrew R. Korte, Purnima B. Neogi, Ebony Love, Johannes Fuchs, Kerstin Strupat, Ljudmilla Borisjuk, Vladimir Shulaev, Young Jin Lee, Kent D. Chapman*, The Plant Cell, 2012, 24, 622-636.
: This work is also highlighted in 'in-brief' article within the journal.
37. "Use of mass-spectrometry for imaging metabolites in plants", Young-Jin Lee, D.C. Perdian, Zhihong Song, Edward Yeung, Basil Nikolau*, The Plant Journal, 2012, 70, 81-95 (invited review).
36. "Mass Spectrometric Imaging as a High-Spatial Resolution Tool for Functional Genomics: Tissue-Specific Gene Expression of TT7 Inferred from Heterogeneous Distribution of Metabolites in Arabidopsis flowers", Andrew R. Korte, Zhihong Song, Basil J. Nikolau, Young Jin Lee*, Analytical Methods, 2012, 4 (2), 474 - 481.
35. "Protein profiling of the potato petiole under short day and long day photoperiods", Shweta Shah, Young-Jin Lee, David J. Hannapel, and A. Guruaj Rao*, J. Proteomics, 74, 212-230, 2011
34. "Novel Imaging MS Methodology for More Chemical Information in Less Data Acquisition Time Utilizing a Hybrid Linear Ion Trap-Orbitrap Mass Spectrometer", David C. Perdian, Young Jin Lee*, Anal. Chem., 82, 9393-9400, 2010.
33. “Petroleomic Analysis of Bio-Oils from the Fast Pyrolysis of Biomass: Laser Desorption Ionization-Linear Ion Trap-Orbitrap Mass Spectrometry Approach”, Erica A. Smith, Young Jin Lee*, Energy & Fuels, 24, 5190-5198, 2010.
32. "High Spatial and High Mass Resolution Imaging of Surface Metabolites of Arabidopsis thaliana by Laser Desorption Ionization Mass Spectrometry using Colloidal Silver”, Ji Hyun Jun, Zhihong Song, Zhenjiu Liu, Basil J. Nikolau, Edward S. Yeung, and Young Jin Lee*, Anal. Chem. 82, 3255-3265, 2010; a high-light article at Analytical Chemistry website.
31. "In Situ Probing of Cholesterol in Astrocytes at the Single Cell Level using Laser Desorption Ionization Mass Spectrometric Imaging with Colloidal Silver”, D. C. Perdian, Sangwon Cha, Jisun Oh, Donald Sakaguchi, E. S. Yeung, and Young Jin Lee*, Rapid Commun. Mass Spectrom. 24: 1147-1154, 2010.
30."Crystal Structure of the Membrane Fusion Protein CusB from Escherichia Coli”", Chih-Chia Su, Feng Yang, Feng Long, Deepak Reyon, Mathew D. Routh, Dennis W. Kuo, Adam K. Mokhtari, Jonathan D. Van Ornam, Katherine L. Rabe, Julie A. Hoy, Young Jin Lee, Kanagalaghatta R. Rajashankar, Edward W. Yu*, J. Mol. Biol., 393(2):342-55, 2009.
29. "Probability Based Shotgun Cross-Linking Sites Analysisis", Young Jin Lee, J. Am. Soc. Mass Spectrom., 20, 1896-1899, 2009.

The Work at UC Davis

28. “Pumpkin eIF5A isoforms interact with components of the translational machinery in the cucurbit sieve tube system”, Yi Ma, Eriko Miura, Byung-Kook Ham, Hao-Wen Cheng, Young-Jin Lee, William J. Lucas*, accepted in Plant J. on Aug 28th, 2010.
27. “Analysis of the Pumpkin Phloem Proteome Provides Functional Insights into Angiosperm Sieve Tube Function”, Ming-Kuem Lin+, Young-Jin Lee+, Tony J. Lough, Brett S. Phinney, and William J. Lucas*, Mol. Cell. Proteomics, 2009, 8, 343-356 (+ equal contribution).
26. “Distinguishing Mouse Strains by Proteomic Analysis of Pelage Hair”, Robert H. Rice*, David M. Rocke, Hua-Sheng Tsai, Kathleen A. Silva, Young Jin Lee, John P. Sundberg, J. Invest. Dermatology, (Published on line, Mar 19, 2009); doi: 10.1038/jid.2009.52.
25. “Founder mutations in the lipase H (LIPH) gene in families with autosomal recessive woolly hair/hypotrichosis”. Yutaka Shimomura, Muhammad Wajid, Abraham Zlotogorski, Amelia Mohabir, Young Jin Lee, Robert H. Rice, and Angela M. Christiano*, J. Invest. Dermatology (Published on line, Mar 5, 2009); doi: 10.1038/jid.2009.19.
24. “Mass Spectrometry based Cross-linking Sites Mapping for Structural Elucidation of Protein and Protein Complex”, Young Jin Lee, Molecular Biosystems, 2008, 4, 816 (invited review).
23. “Shotgun Cross-linking Analysis for Studying Quaternary and Tertiary Protein Structures”, Young Jin Lee*, Laura L. Lachner, Jodi M. Nunnari, Brett S. Phinney, J. Proteome Res., 2007, 6 (10), 3908 -3917. (first and corresponding author)
22. “FLOWERING LOCUS T Protein May Act as the Long-Distance Florigenic Signal in the Cucurbits”, Ming-Kuelm Lin, Helene Belanger, Erika Varkonyi-Gasic, Young-Jin Lee, Erico Miura, Karla Gendler, Richard A. Jorgensen, Brett Phinney, Tony J. Lough and William J. Lucas*, Plant Cell, 2007, 19, 1488-1506.
21. “The citrus fruit proteome: insights into citrus fruit metabolism”, E. Katz, M. Fon, Y.J. Lee, B.S. Phinney, A. Sadka, E. Blumwald*, Planta, 2007, 226, 989-1005.
20. “Extracellular glycosylphosphatidylinositol-anchored mannoproteins and proteases of Cryptococcus neoformans”, Richard A. Eigenheer, Young Jin Lee, Eduardo Blumwald, Brett S. Phinney, Angie Gelli*, FEMS Yeast Research, 2007, 7, 499.
19. “A Distinctive Repertoire of Contingency Genes Conferring Mutation-based Phase Variation and Combinatorial Expression of Surface Lipoproteins in Mycoplasma capricolum subsp. capricolum of the Mycoplasma mycoides Phylogenetic Cluster”, Kim S. Wise*, Mark F. Foecking, Kerstin Röske, Young Jin Lee, Young Moo Lee, Anup Madan, and Michael J. Calcutt, J. Bacteriology, 2006, 188, 4926-4941.
18. “Proteome Analysis of Human Hair by Two Dimensional Liquid Chromatography Coupled with Tandem Mass Spectrometry (2-D LC-MS/MS): From Protein Identification to Posttranslational Modification”, Young Jin Lee, Robert H. Rice*, and Young Moo Lee, Mol. Cell. Proteomics, 2006, 5, 789-800.
17. “Core of the Partner Switching Signaling Mechanism is Conserved in the Obligate Intracelluar Pathogen Chlamydia trachomatis”, Lei Hua, P. Scott Hefty, Young Jin Lee, Young Moo Lee, Richard S. Stephens, and Chester W. Price*, Molecular Microbiology, 2006, 59, 623.
16. “Identification of proteins adducted by reactive metabolites of naphthalene and 1- nitronaphthalene in dissected airways of rhesus macaques”, Ching Yu Lin, Bridget C. Boland, Young Jin Lee, Michelle R. Salemi, Dexter Morin, Lisa A. Miller, Charles G. Plopper, Alan R. Buckpitt*, Proteomics, 2006, 6, 972.
15. “c1 Fragment Ions in Collision-induced Dissociation of Glutamine Containing Peptide Ions: A Tip for De Novo Sequencing” Young Jin Lee and Young Moo Lee*, Rapid Commun. Mass Spectrom. 2004; 18, 2069-2076.

The work at Indiana University

14. “Development of Field Modulation in a Split-Field Drift Tube for High-Throughput Multi-dimensional Separations” S. L. Koeniger, S. J. Valentine, S. Myung, Y. J. Lee, D. E. Clemmer*, J. Proteome Research. 2005, 4, 25-35.
13. “Development of High-Sensitivity Ion Trap-IMS-TOF Techniques: A High-Throughput Nano-LC/IMS/TOF Separation of the Drosophila Fly Proteome”, S. Myung, Y. J. Lee, M. H. Moon, J. A. Taraszka, R. Sowell, S. Koeniger, A.E. Hilderbrand, S.J. Valentine, L. Cherbas, T. C. Kaufmann, D. F. Miller, Y. Mechref, M. V. Novotny, M. Ewing, D. E. Clemmer*, Anal. Chem. 2003, 75, 5137-5145
12. “Development of high-throughput LC-injected ion mobility-Q-TOF techniques for analysis of complex peptide mixtures”, Y. J. Lee, C. S. Hoaglund-Hyzer, C.A.S. Barnes, A. E. Hilderbrand, S. J. Valentine, D. E. Clemmer*, J. Chromatography B 2002, 782, 343-351 (invited to the special issue for proteomics).
11. “Structural transitions of electrosprayed ubiquitin ions stored in an ion trap over ~10ms to 30s”, S. Myung, E. R. Badman, Y. J. Lee, D.E. Clemmer*, J. Phys. Chem. A 2002, 106, 9976-9982.
10. “Coupling Ion Mobility Separations, Collisional Activation Techniques, and Multiple Stages of MS for Analysis of Complex Peptide Mixtures”, C. S. Hoaglund-Hyzer, Y. J. Lee, A. E. Counterman, D. E. Clemmer*, Anal. Chemistry, 2002, 74, 992-1006.
9. “Collision-Induced Dissociation of Mobility-Separated Ions using an Orifice-Skimmer Cone at the Back of a Drift Tube”, Y. J. Lee, C. S. Hoaglund-Hyzer, J. A. Taraszka, G. A. Zientara, A. E. Counterman, D. E. Clemmer*, Anal. Chemistry, 2001, 73, 3549-3555.

The work at Hyundai Electronics

8. “Correction of SIMS depth profile distorted by oxygen flooding”, Y. J. Lee*, C. S. Jung, M.-N. Yoon, S.-Y. Lee, J. Korean Vacuum Soc., 2001, 10, 225-233.

The work at Seoul University

7. “Collision-induced dissociation of cesium iodide cluster ions. Scattering angular distribution and excitation mechanism”, Y. J. Lee and M. S. Kim*, J. Phys. Chem. A 1997, 101, 6148-6157.
6. “Elimination of the multiple collision effect from a mass-analyzed ion kinetic energy profile in collision-induced dissociation of high mass ions”, Y. J. Lee and M. S. Kim*, Int. J. Mass Spectrom. Ion Processes 1997, 171, 31-38.
5. “Scattering angular distributions in collisionally activated dissociation of some high mass ions; Analysis of mass-analyzed ion kinetic energy peak shapes”, Y. J. Lee and M. S. Kim*, J. Chem. Phys. 1995, 103, 5442-5450.
4. “Analysis of mass-analyzed ion kinetic energy peak profiles. III. Analytical expression for a peak shape generated by collisionally activated dissociation”, Y. J. Lee, H. Y. So, and M. S. Kim*, Rapid Commun. Mass Spectrom. 1994, 8, 571-577.
3. “C-F bond cleavage in collisionally activated dissociation of polyfluorinated molecular ions: Empirical structure-upward-shift correlation”, Y. J. Lee and M. S. Kim*, Rapid Commun. Mass Spectrom. 1993, 7, 994-998.
2. “Anisotropic C-F bond cleavage in collisionally activated dissociation of a hexafluorobenzene molecular ion beam”, Y. J. Lee and M. S. Kim*, J. Phys. Chem. 1993, 97, 1119-1124.
1. “Anomalous translational energy upshift in collisionally activated dissociation of hexafluorobenzene molecular ion”, Y. J. Lee and M. S. Kim*, Chem. Phys. Lett. 1992, 192, 89-93; Erratum in Chem. Phys. Lett. 1992, 195, 286.

Invited Talk (Major conferences or Institution)

19. University of South Dakota, Nov 25, 2013 (planned).
18. 9th North American FT MS Conference, to be held at the Key West Marriott Beachside Hotel, Florida, April 29, 2013.
17. University of Kansa, May 1, 2013.
16. Kansas State University, May 2, 2013.
15. Purdue University, May 15, 2013.
14. Indiana University, Feb 19, 2013.
13. University of Nebraska-Lincoln Feb 15, 2013.
12. Energy@Magnet, Workshop at National High Magnetic Field Laboratory, Tallahassee, Fl, Nov 7-8, 2012.
11. ACS Midwest Regional Meeting, Oct 24-27, 2012, Omaha, NE.
10. 19th International Mass Spectrometry Conference, Kyoto, Japan, Sep 16-20th, 2012.
9. University of St. Thomas, Oct 14th, 2011.
8. Gordon Research Conference on ÔPlant Lipids: Structure, Metabolism & Function, Jan 30th-Feb 4th, 2011, Galveston, TX.
7. ACS Central Regional Meeting, Jun 8-10th, 2011, Indianapolis, IN.
6. Imaging Symposium, Oct 25th-Oct 26th, 2010, Korean Basic Science Institute, Ochang, Korea.
5. Seoul National University, Seoul, Korea, Oct 28th, 2010.
4. Imaging Symposium, Oct 29th, 2010, Konkuk University, Seoul, Korea.
3. American Chemical Society 239th National Meeting, Mar 25th, 2010, San Francisco, CA.
2. Department of Biological Sciences, University of North Texas, Denton, TX, Feb 19, 2010.
1. 36th Federation of Analytical Chemistry and Spectroscopy Societies (FACSS), Marriott Hotel, Louisville, KY, October 18 - 22, 2009.