Taner Z. Sen, Ph.D.

Computational Biologist, USDA-ARS
Collaborator Assistant Professor, Department of Genetics, Development and Cell Biology
1025 CGIL
Iowa State University
Ames, IA 50011
515-294-5326
taner@iastate.edu

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Research

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[Computational
Tools]

Professional
Resources

Personal

MaizeGDB

Iowa State
University

Program Codes

• Anisotropic Network Model (ANM) calculates directions of motion for individual modes
  of motion.
  


• The protein input file for ANM (1hrc.pdb) can be found at Brookhaven Protein Data Bank.

• Gaussian Network Model (GNM) calculates magnitudes of motion - mean-square amplitudes,
  in total and for individual modes of motion.


• The protein input file for GNM (1aqb.pdb) can be found at Brookhaven Protein Data Bank.

• Movie Maker for ANM create movies of normal modes from ANM outputs using VMD freeware software.
  

Servers

• GOR V Protein Secondary Structure Prediction Server