- Week 1:

1-way ANOVA oneway.r

2-way ANOVA twoway.r - Week 4:

Analysis of an Aitken model aitken.r. - Week 5:

Plotting 2D likelihood and profile likelihood for the AR(1) model lnLar1.r

Calculating profile likelihood for rho in an AR(1) model profile.r - Week 6:

Fitting a Bernoulli logistic regression challenger.r

Confidence intervals for logistic regression coefficients (new code) confint.r

Fitting a Binomial logistic or Poisson regression trout.r - Week 6/7

Calculations with proportions prop.r - Week 8: fitting a linear mixed effect model sdlwtLME.r
- Week 10: fitting a split plot model splitPlot.r
- Week 11: Inference for a linear mixed effect model SeedlingInference.r

Information from Ben Bolker about what distributions are used by mcmcsamp mcmcsamp.txt

An edited discussion on inference in lmer is here - Week 11: BLUP's for random effects blup.r
- Week 11: Fitting a random coefficient regression model chute.r
- Week 11: Fitting repeated measures models asparagus.r
- Week 12: Fitting a GLMM or GEE deer.r
- Week 12: Fitting a GLMM or GEE with code for all the plots deer2.r
- Week 13: Fitting a nonlinear model nls.r
- Week 13: Fitting a nonlinear mixed model theoph.r
- Week 13: Penalized regression splines diabetes.r