Publications

    [10] Manibog, K., Sankar, K., Kim, S., Zhang, Y., Sivasankar, S., Jernigan, R. L.(2015) Molecular determinants of cadherin ideal bond formation: conformation dependent unbinding on a multidimensional landscape, Proc. Nat. Acad. Sci. (In press.)

    [9] Sankar, K., Liu, J., Wang, Y., Jernigan, R. L.(2015) Distributions of experimental protein structures on coarse-grained free energy landscapes, J. Chem. Phys. 143(24):243153 [Link]

    [8] Katebi, A. R., Sankar, K., Jia, K., Jernigan, R. L.(2014) The Use of Experimental Structures to Model Protein Dynamics, Meth. Mol. Biol. 1215: 213-236 [Link]

    [7] Sankar, K., Walia R. R., Mann C. M., Jernigan, R. L., Honavar V. G., Dobbs D. (2014) An analysis of conformational changes upon RNA-protein binding, Proc. 5th ACM Conf. on Bioinf., Comp. Biol. and Health Inf. 592-593 [Link]

    [6] Malhotra, S., Sankar, K., Sowdhamini, R. (2014) Structural interface parameters are discriminatory in recognising near-native poses of protein-protein interactions, PLoS ONE 9(2): e80255. [Link]

    [5] Nagarathnam, B., Karpe, S. D., Harini, K., Sankar, K., Iftekhar, M., Rajesh, D., Gji, S., Archunan, G., Balakrishnan, V., Gromiha, M. M., Nemoto, W., Fukui, K., Sowdhamini, R. (2014) DOR - A Database of Olfactory Receptors - integrated repository for sequence and secondary structural information of olfactory receptors in selected eukaryotic genomes, Bioinformatics & Biology Insights 8: 147-158. [Link]

    [4] M. Manoharan, Sankar, K., Offmann, B., Sowdhamini, R. (2013) Association of putative members to family of mosquito odorant binding proteins: Scoring scheme using Fuzzy Functional Templates and Cys residue positions, Bioinformatics and Biology Insights 7: 231-251. [Link]

    [3] Harini, K., Sankar, K., Nemoto, W., Fukui, K., Sowdhamini, R. (2012) Residue conservation and dimer-interface analysis of olfactory receptor molecular models :100 OR models for the molecular biochemists Journal of Molecular Biochemistry 1(3): 161-170. [Link]

    [2] Nagarathnam, B., Sankar, K., Dharnidharka, V., Balakrishnan, V., Archunan, G., Sowdhamini, R. (2011) TM-MOTIF: an alignment viewer to annotate predicted transmembrane helices and conserved motifs in aligned set of sequences. Bioinformation 7(5): 214-221. [Link]

    [1] Nagarathnam, B., Sankar, K., Dharnidharka, V., Balakrishnan, V., Archunan, G., Sowdhamini, R. (2011). Insights from the analysis of conserved motifs and permitted amino acid exchanges in the human, fly and worm GPCR clusters. Bioinformation 7(1): 15-20. [Link]