Publications

* indicates corresponding author

	2009		2008		2007		2006		2005		2004		2003		2002		2001		2000-

2009 Top

Abebe, T*, RP Wise, and RW Skadsen. 2009. Comparative transcriptional profiling established the awn as the major photosynthetic organ of the barley spike while the lemma and the palea primarily protect the seed. The Plant Genome 2(3): 247-259. [Full Text]

Xi, L, MJ Moscou, Y Meng, W Xu, RA Caldo, M Shaver, D Nettleton, and RP Wise*. 2009. Transcript-based cloning of RRP46, a regulator of rRNA processing and R gene–independent cell death in barley–powdery mildew interactions. The Plant Cell. [Advance Online Publication]

Kronmiller, BA and RP Wise*. 2009. Computational finishing of large sequence contigs reveals interspersed nested repeats and gene islands in the rf1-associated region of maize. Plant Physiology 151: 483-495. [Full Text]

Schreiber, AW*, T Sutton, RA Caldo, E Kalashyan, B Lovell, G Mayo, GJ Muehlbauer, A Druka, R Waugh, RP Wise, P Langridge, and U Baumann. 2009. Comparative transcriptomics in the Triticeae. BMC Genomics 10: 285. [Full Text]

Wise, RP*, N Lauter, L Szabo, and P Schweizer. 2009. Genomics of Biotic Interactions in the Triticeae. In Triticeae Genomics Handbook (Feuillet, C. and Muehlbauer, G. eds), Chapter 19. New York: Springer.

Hu, P, Y Meng, and RP Wise*. 2009. Functional contribution of chorismate synthase, anthranilate synthase, and chorismate mutase to penetration resistance in barley-powdery mildew interactions. Molecular Plant-Microbe Interactions 22(3): 311-320. [Full Text]

Meng, Y, MJ Moscou, and RP Wise*. 2009. Blufensin1 negatively impacts basal defense in response to barley powdery mildew. Plant Physiology 149: 271-285. [Full Text]

Schulte, D, TJ Close, A Graner, P Langridge, T Matsumoto, G. Muehlbauer, K Sato, AH Schulman, R Waugh, RP Wise, and N Stein*. 2009. The international barley sequencing consortium—at the threshold of efficient access to the barley genome. Plant Physiology 149: 142-147. [Full Text]

2008 Top

Moscou, M, RA Caldo, N Lauter, and RP Wise*. 2008. Construction of coexpression networks to explore barley-powdery mildew interactions. In Plant-Microbe Interactions: Molecular and Genetic Perspectives St. Paul, MN: International Society of Molecular Plant-Microbe Interactions.

Druka, A, E Potokina, ZW Luo, N Bonar, I Druka, L Zhang, DF Marshall, B Steffenson, T Close, RP Wise, A Kleinhofs, RW Williams, MJ Kearsey, and R Waugh. 2008. Exploiting regulatory variation to identify genes underlying loci of quantitative resistance to the wheat stem rust pathogen Puccinia graminis f. sp. tritici in barley. Theoretical and Applied Genetics 117: 261-272. [Full Text]

Potokina, E, A Druka, Z Luo, M Moscou, R Wise, R Waugh, and M Kearsey. 2008. Tissue-dependent limited pleiotropy affects gene expression in barley. Plant Journal 56(2): 287-296. [Full Text]

Hu, P and RP Wise*. 2008. Diversification of Lrk/Tak kinase gene clusters is associated with subfunctionalization and cultivar-specific transcript accumulation in barley. Functional & Integrative Genomics 8(3): 199-209. [Full Text]

Kronmiller, BA and RP Wise*. 2008. TEnest: Automated chronological annotation and visualization of nested plant transposable elements. Plant Physiology 146: 45-59. [Full Text] [Cover Picture]

Potokina, E, A Druka, Z Luo, R Wise, R Waugh, and M Kearsey. 2008. Gene expression quantitative trait locus analysis of 16,000 barley genes reveals a complex pattern of genome-wide transcriptional regulation. The Plant Journal 53(1): 90-101. [Full Text]

2007 Top

Wise RP*, MJ Moscou, AJ Bogdanove, and SA Whitham. 2007. Transcript profiling in host-pathogen interactions. Annual Review of Phytopathology 45: 329-369. [Full Text]

Luo ZW, E Potokina, A Druka, R Wise, R Waugh, and MJ Kearsey. 2007. SFP genotyping from Affymetrix arrays is robust but largely detects cis-acting expression regulators. Genetics 176: 789-800. [Full Text]

2006 Top

Rossi C, A Cuesta-Marcos, I Vales, L Gomez-Pando, G Orjeda, R Wise, K Sato, K Hori, F Capettini, H Vivar, X Chen, and P Hayes. 2006. Mapping multiple disease resistance genes using a barley mapping population evaluated in Peru, Mexico, and the USA. Molecular Breeding 18(4): 355-366. [Full Text]

Nettleton D, JTG Hwang, RA Caldo, and RP Wise. 2006. Estimating the number of true null hypotheses from a histogram of p-values. Journal of Agricultural, Biological, and Environmental Statistics 11(3): 337-356. [Full Text]

Kirst M, R Caldo, P Casati, G Tanimoto, V Walbot, RP Wise, and ES Buckler. 2006. Genetic diversity contribution to errors in short oligonucleotide microarray analysis. Plant Biotechnology Journal 4: 489-498. [Full Text]

Caldo RA, D Nettleton, J Peng, and RP Wise*. 2006. Stage-specific suppression of basal defense discriminates barley plants containing fast- and delayed-acting Mla powdery mildew resistance alleles. Molecular Plant-Microbe Interactions 19(9): 939-947. [Full Text]

Druka A, G Muehlbauer, I Druka, R Caldo, U Baumann, N Rostoks, A Schreiber, RP Wise, T Close, A Kleinhofs, A Graner, A Schulman, P Langridge, K Sato, P Hayes, J McNicol, D Marshall, and R Waugh. 2006. An atlas of gene expression from seed to seed through barley development. Functional & Integrative Genomics 6: 202-211. [Full Text]

Halterman, DA and RP Wise*. 2006. Upstream open reading frames of the barley Mla13 powdery mildew resistance gene function co-operatively to down-regulate translation. Molecular Plant Pathology 7(3): 167-176. [Full Text]

2005 Top

2004 Top

Close, TJ, S Wanamaker, R Caldo, SM Turner, DA Ashlock, JA Dickerson, RA Wing, GJ Muehlbauer, A Kleinhofs and RP Wise*. 2004. A new resource for cereal genomics: 22K barley GeneChip comes of age. Plant Physiology 134: 960-968. [Abstract]

Halterman, D and RP Wise*. 2004. A single amino acid substitution in the sixth leucine-rich repeat of barley MLA6 and MLA13 alleviates dependence on RAR1 for disease resistance signaling. Plant Journal 38: 215-226. [Abstract] [Cover Picture]

2003 Top

Cui, XQ, A-P Hsia, F Liu, DA Ashlock, RP Wise, and PS Schnable*. 2003. Alternative transcription initiation sites and polyadenylation sites are recruited during Mu suppression at the rf2a locus in maize. Genetics 163:685-698.[Abstract]

2002 Top

Wise, RP*, DR Pring. 2002. Nuclear-mediated mitochondrial gene regulation and male fertility in higher plants: Light at the end of the tunnel? PNAS 99:10240-10242.

2001 Top

Zhou, F, J Kurth, F Wei, C Elliott, G Valè, N Yahiaoui, B Keller, S Somerville, R Wise, and P Schulze-Lefert*. 2001. Cell-autonomous expression of barley Mla1 confers race-specific resistance to the powdery mildew fungus via a Rar1 independent signaling pathway. Plant Cell 13:337-350. [Abstract]

Yu, GX, Braun, E, and RP Wise*. 2001. Rds and Rih mediate hypersensitive cell death independent of gene-for-gene resistance to the oat crown rust pathogen, Puccinia coronata f. sp. avenae. Molecular Plant Microbe Interactions 14:1376-1383. [Abstract] [Cover Picture]

2000- Top

Wise, RP*. 2000. Disease resistance: What’s brewing in barley genomics. Plant Disease 84:1160-1170.

Yu, Y, JP Tomkins, R Waugh, DA Frisch, D Kudrna, A Kleinhofs, RS Brueggeman, GJ Muehlbauer, RP Wise,·and RA Wing*. 2000. A bacterial artificial chromosome library for barley (Hordeum vulgare L.) and the identification of clones containing putative resistance genes. Theoretical & Applied Genetics 7:1093-1099. [Abstract]

Wise, RP*, F Wei, and R Wing. 2000. Sequence Analysis of the 270-kb Mla-Spanning Region Reveals Coupled Defense Gene Families. Proceedings of the 8th International Barley Genetics Symposium. Vol. II, pp. 208-210. Adelaide, Australia.

Gobelman-Werner, K and RP Wise*. 2000. RAPD-derived markers flanking the Mla resistance gene cluster in barley. Journal of Agricultural Genomics. Online at http://wheat.pw.usda.gov/jag/papers00/paper400/Werner&Wise.htm.

Kianian SF*, SL Fox , S Groh, N Tinker, LS O’Donoughue , PJ Rayapati , RP Wise, M Lee, ME Sorrells, SD Tanksley, G Fedak, SJ Molnar, HW Rines and RL Phillips. 2000. Molecular marker linkage maps in diploid and hexaploid oat (Avena sp.). DNA-based markers in plants’, 2^nd edition. R.L. Phillips and I.K. Vasil. Chapter 25 pp.443-462.

Wise, RP*, K Gobelman-Werner, P Deqing, CL Dill, and PS Schnable. 1999. Mitochondrial transcript processing and restoration of male fertility in T-cytoplasm maize. Presented at the 1998 American Genetics Association Symposium "Plant Mitochondrial Genetics and Molecular Biology" for the Journal of Heredity 90:380-385. [Abstract]

Wise, RP, CR Bronson, PS Schnable, and HT Horner*. 1999. The genetics, pathology and molecular biology of T-cytoplasm male sterility in maize. Advances in Agronomy 65: 79-130.

Wei, F, K Gobelman-Werner, SM Morroll, J Kurth, L Mao, R Wing, D Leister, P Schulze-Lefert, and RP Wise*. 1999. The Mla (powdery mildew) resistance cluster is associated with three NBS-LRR gene families and suppressed recombination within a 240-kb DNA interval on chromosome 5S (1HS) of barley. Genetics 153:1929-1948. [Abstract]

Bush, AL and RP Wise*. 1998. High resolution mapping adjacent to the Pc71 crown-rust resistance locus in hexaploid oat. Molecular Breeding 4:13-21. [Abstract]

Schnable, PS* and RP Wise*. 1998. The molecular basis of cytoplasmic male sterility and fertility restoration. Trends in Plant Science 3:175-180.

Dill, CL, RP Wise*, and PS Schnable. 1997. Rf8 and Rf* mediate unique T-urf13-transcript accumulation, revealing a conserved motif associated with RNA processing and restoration of pollen fertility in T-cytoplasm maize. Genetics 147:1367-1379. [Abstract]

Bush, AL and RP Wise*. 1996. Crown rust resistance loci on linkage groups 4 and 13 in cultivated oat. Journal of Heredity 87:427-432. [Abstract]

Wise, RP*, M Lee, and PJ Rayapati. 1996. Recombination within a 5-cM region in diploid Avena reveals multiple specificities conferring resistance to Puccinia coronata. Phytopathology 86:340-346. [Abstract]

Yu, GX, AL Bush, and RP Wise*. 1996. Comparative mapping of homoeologous group 1 regions and genes for resistance to obligate biotrophs in Avena, Hordeum, and Zea mays. Genome 39:155-164. [Abstract]

DeScenzo, RD and RP Wise*. 1996. Variation in the ratio of physical to genetic distance in intervals adjacent to the Mla locus on barley chromosome 1H. Molecular & General Genetics 251:472-482. [Abstract]

Wise, RP*, CL Dill, and PS Schnable. 1996. Mutator-induced mutations of the rf1 nuclear fertility restorer of T-cytoplasm maize alter the accumulation of T-urf13 mitochondrial transcripts. Genetics 143:1383-1394. [Abstract]

Cui, XQ, RP Wise, and PS Schnable*. 1996. The rf2 nuclear restorer gene of male-sterile, T-cytoplasm maize. Science 272:1334-1336. [Abstract]