Statistics 516 Lecture Notes

Spring 2011


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Lecture Notes

Preliminaries     PowerPoint     PDF
  1. Basic Biology Related to Technology for Measuring Gene Expression     PowerPoint     PDF
  2. Example Gene Expression Experiments     PowerPoint     PDF
  3. Introduction to cDNA Microarray Technology     PowerPoint     PDF
  4. Introduction to Oligonucleotide Microarray Technology     PowerPoint     PDF
  5. Introduction to Microarray Image Processing     PowerPoint     PDF
  6. Simple Examples of Analysis for a Single Gene     PowerPoint     PDF
  7. Preprocessing Methods for Two-Color Microarray Data     PowerPoint     PDF
  8. The LOWESS Smoother     PowerPoint     PDF
  9. Preprocessing for Affymetrix GeneChip Data     PowerPoint     PDF
  10. Introduction to Experimental Design     PowerPoint     PDF    
  11. Split Plot Experimental Designs     PowerPoint     PDF
  12. Incomplete Block Experimental Designs     PowerPoint     PDF
  13. Latin Square Experimental Designs     PowerPoint     PDF
  14. Introduction to Mixed Linear Models     PowerPoint     PDF
  15. Choosing between Competing Experimental Designs     PowerPoint     PDF
  16. Multiple Testing Methods for the Analysis of Microarray Data     PowerPoint     PDF
  17. Uniform-Beta Mixture Modeling of the p-value Distribution     PowerPoint     PDF
  18. Mixture modeling of the distribution of p-values from t-tests     PowerPoint     PDF
  19. Estimation of Gene-Specific Variances     PowerPoint     PDF
  20. Parametric Empirical Bayes Methods for Microarrays     PowerPoint     PDF
  21. Introduction to Randomization Tests     PowerPoint     PDF
  22. Significance Analysis of Microarrays (SAM)     PowerPoint     PDF
  23. Cluster Analysis of Microarray Data     PowerPoint     PDF
  24. Identifying Differentially Expressed Gene Categories     PowerPoint     PDF
  25. Example Analysis of a Two-Color Array Experiment Using LIMMA     PowerPoint     PDF
  26. Example Analysis of an Affymetrix Experiment Using AFFY and LIMMA     PowerPoint     PDF
  27. Introduction to the Analysis of RNAseq Data     PowerPoint     PDF

Last Modified Monday, 11-Apr-2011 22:35:22 CDT