Research articles

Lu, H., Patil, P., Van Sluys, M.-A., White, F.F., Ryan, R.P., Dow, J.M., Rabinowicz, P., Salzberg, S.L., Leach, J.E., Sonti, R., Brendel, V., and Bogdanove, A.J. (2008). Acquisition and evolution of plant pathogenesis-associated gene clusters and candidate determinants of tissue-specificity in Xanthomonas. PLoS ONE 3:e3828.

Seo, Y.-S., Sriariyanun, M., Wang, L., Pfeiff, J., Phetsom, J., Lin, Y., Jung, K.-H., Chou, H.-H., Bogdanove, A.J., and Ronald, P.C. (2008). A two-genome microarray for the rice pathogens Xanthomonas oryzae pv. oryzae and X. oryzae pv. oryzicola and its use in the discovery of a difference in their regulation of hrp genes. BMC Microbiology 8:99.

Salzberg, S.L., Sommer, D.D., Schatz, M.C., Phillippy, A.M., Rabinowicz, P.D., Tsuge, S., Furutani, A., Ochiai, H., Delcher, A.L., Kelley, D., Madupu, R., Puiu, D., Radune, D., Shumway, M., Trapnell, C., Aparna, G., Jha, G., Pandey, A., Patil, P.B., Ishihara, H., Meyer, D.F., Szurek, B., Verdier, V., Koebnik, R., Dow, J.M., Ryan, R.P., Hirata, H., Tsuyumu, S., Lee, S.W., Ronald, P.C., Sonti, R.V., Van Sluys, M.-A., Leach, J.E., White, F.F., and Bogdanove, A.J. (2008) Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A. BMC Genomics 9:204.

Patil, P.B., Bogdanove, A.J., and Sonti, R.V. (2007) The role of horizontal transfer in the evolution of a highly variable lipopolysaccharide biosynthesis locus in xanthomonads that infect rice, citrus and crucifers. BMC Evol. Biol. 7:243.

Wang, L. Makino, S., Subedee, A. and Bogdanove, A.J. (2007) Novel candidate virulence factors in rice pathogen Xanthomonas oryzae pv. oryzicola revealed by mutational analysis. Applied Env. Microbiol. 73:8023-8027).

Nissinen, R. M, Ytterberg, A. J., Bogdanove, A. J., van Wijk, K. J., and Beer, S. V. (2007) Analyses of the secretomes of Erwinia amylovora and selected hrp mutants reveal novel type III secreted proteins and an effect of HrpJ on extracellular harpin levels. Molecular Plant Pathol.8:55-67.

Wang, L., Eggenberger, A.L., Hill, J., and Bogdanove, A.J. (2006). Pseudomonas syringae effector avrB confers soybean cultivar-specific avirulence on Soybean mosaic virus adapted for transgene expression but effector avrPto does not. Mol. Plant-Microbe Interact.19:304-312.

Makino, S., Sugio, A., White, F.F., and Bogdanove, A.J. (2006). Inhibition of resistance gene mediated defense in rice by Xanthomonas oryzae pv. oryzicola. Mol. Plant-Microbe Interact.19:240-249.

Nino-Liu, D.O., Darnielle, L., and Bogdanove, A.J. (2005) A simple method of mass inoculation of rice effective for both pathovars of Xanthomonas oryzae, and the construction of comparable sets of host cDNA libraries spanning early stages of bacterial leaf blight and bacterial leaf streak. J. Phytopathol. 153:500-504.

Bogdanove, A.J. and Martin, G.B. (2000) AvrPto-dependent Pto-interacting proteins and AvrPto-interacting proteins in tomato. Proc. Natl. Acad. Sci. 97:8836-8840.

Bogdanove, A.J., Bauer, D.W., and Beer, S.V. (1998) Erwinia amylovora secretes DspE, a pathogenicity factor and functional AvrE homolog, through the Hrp (type III secretion) pathway. J. Bacteriol. 180:2244-2247.

Bogdanove, A.J., Kim, J.F., Wei Z.-M., Kolchinsky, P., Charkowski, A.O., Conlin, A.K., Collmer, A., and Beer, S.V. (1998) Homology and functional similarity of an hrp-linked pathogenicity locus, dspEF, of Erwinia amylovora and the avirulence locus avrE of Pseudomonas syringae pathovar tomato. Proc. Natl. Acad. Sci. 95:1325-1330.

Bogdanove, A.J., Beer, S.V., Bonas, U., Boucher, C.A., Collmer, A., Coplin, D.L., Cornelis, G.R., Huang, H.-C., Hutcheson, S.W., Panopoulos, N.J., and Van Gijsegem, F. (1996) Unified nomenclature for broadly conserved hrp genes of phytopathogenic bacteria. Mol. Microbiol 20:681-683.

Bogdanove, A.J., Wei, Z.-M., Zhao, L., and Beer, S.V. (1996) Erwinia amylovora secretes harpin via a Type III pathway and contains a homolog of yopN of Yersinia spp. J. Bacteriol. 178:1720-1730.

Bauer, D.W., Bogdanove, A.J., Beer, S.V., and Collmer. A. (1994) Erwinia chrysanthemi hrp genes and their involvement in soft rot pathogenesis and elicitation of the hypersensitive response. Mol. Plant-Microbe Interact. 7:573-581.

Review articles, book chapters, and conference proceedings

Meyer, D.F., and Bogdanove, A.J. (2008). Genomics-driven advances in Xanthomonas biology. In Plant Pathogenic Bacteria: Genomics and Molecular Biology, R.W. Jackson, ed. (Norwich, UK: Horizon Scientific Press), pp. 147-161.

Wise, R.P., Moscou, M.J., Bogdanove, A.J., and Whitham, S.A. (2007). Transcript profiling in host-pathogen interactions. Ann. Rev. Phytopathol. 45:329-369.

Niño-Liu, D. O., Ronald, P. C., and Bogdanove, A. J. (2006) Xanthomonas oryzae pathovars: model pathogens of a model crop. Molecular Plant Pathol. 7:303-324.

Wang, L., Mahama, A., Darnielle, L., Eggenberger, A., Hill, J., and Bogdanove, A.J. (2005) Recognition of the bacterial effector protein AvrPto in soybean - a case of HR-independent resistance, in Genomic and Genetic Analysis of Plant Parasitism and Defense, Proceedings of the 9th Japan-US Seminar on Plant-Pathogen Interactions, Shizuoka, Japan, November 1-7, 2003 (St. Paul, MN: APS Press) pp. 103-114

Martin, G.B., Bogdanove, A.J., Sessa, G. (2003) Understanding the functions of plant disease resistance proteins. Annu. Rev. Plant Biol. 54: 23-61.

Bogdanove, A.J. (2002) Pto update: recent progress on an ancient plant defense signaling pathway. Molecular Plant Pathol. 3: 283-288.

Bogdanove, A.J. (2002) Protein-protein interactions in pathogen recognition by plants. Plant Mol. Biol. 50:981-989

Devarenne, T.P., Riely, B.K., Lin, N.-C., Kim, Y.-J., Cohn, J., Mysore, K., Charkravarthy, S., Bogdanove, A.J., D'Ascenzo, M., Debbie, P., Tuori, B., Martin, G.B. (2002) Recognition of Pseudomonas effector proteins by tomato and profiling of plant gene expression changes that occur during plant-pathogen interactions, in Biology of Plant-Microbe Interactions, Vol. 3: Proceedings of the 10^th International Symposium on Molecular Plant-Microbe Interactions, Madison, Wisconsin, USA, July 10-14, 2001 (St. Paul, MN: IS-MPMI) pp. 58-63.

Bogdanove, A.J., Gu, Y.-Q., Nakajima, Y. , Sessa, G. , and Martin, G.B. (1999) Early events in AvrPto/Pto-mediated activation of defense responses,   in Biology of Plant-Microbe Interactions: Proceedings of the 9^th International Symposium on Molecular Plant-Microbe Interactions, Amsterdam, The Netherlands, July 25-30, 1999 (St. Paul, MN: IS-MPMI) pp. 238-242

Bogdanove, A.J., Kim, J.F., and Beer, S.V. (1999) Disease-specific genes of Erwinia amylovora: keys to understanding pathogenesis and potential targets for disease control in Fire Blight and Its Causative Agent, Erwinia amylovora. J. L. Vanneste, ed. (Wallingford, UK:CAB International) pp. 163-177.

Websites and web-based resources

Westgate, M., Vogel, K., Darnielle, L., and Bogdanove, A.J. (under development) "Xanthomonas Genomics Resource" at http://www.plantpath.iastate.edu/xgr.

Darnielle, L., Vogel, K., and Bogdanove, A.J. (2002 onward) "Functional genomics of rice susceptibility to bacterial pathogens" at www.public.iastate.edu/~ajbog/nsf.

Vogel, K., Darnielle, L., and Bogdanove, A.J. (2001 onward) "Bogdanove laboratory" at www.public.iastate.edu/~ajbog.