Updated January 25, 2012 . Unless otherwise noted, links direct to the journal online, which may require a subscription. You may equest a reprint by email.

Primary articles

Mak, A.S., Bradley, P., Cernadas, R. A., Bogdanove, A.J., and Stoddard, B.S. (2012) The crystal structure of TAL effector PthXo1 bound to its DNA target. Science, Jan. 5, 2012, doi:10.1126/science.1216211.

Bogdanove, A.J.,Koebnik, R., Lu, H., Furutani, A., Angiuoli, S.V., Patil, P.B., Van Sluys, M.A., Ryan, R.P., Meyer, D.F., Han, S.W., Aparna, G., Rajaram, M., Delcher, A.L., Phillippy, A.M., Puiu, D., Schatz, M.C., Shumway, M., Sommer, D.D., Trapnell, C., Benahmed, F., Dimitrov, G., Madupu, R., Radune, D., Sullivan, S., Jha, G., Ishihara, H., Lee, S.W., Pandey, A., Sharma, V., Sriariyanun, M., Szurek, B., Vera-Cruz, C.M., Dorman, K.S., Ronald, P.C., Verdier, V., Dow, J.M., Sonti, R.V., Tsuge, S., Brendel, V.P., Rabinowicz, P.D., Leach, J.E., White, F.F., and Salzberg, S.L. (2011). Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp. J. Bacteriol. 193:5450-5464.

Cermak, T., Doyle, E.L., Christian, M., Wang, L., Zhang, Y., Schmidt, C., Baller, J.A., Somia, N.V., Bogdanove, A.J., and Voytas, D.F. (2011) Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting. Nucleic Acids Res. 39:e82. Open Access

Christian, M., Cermak, T., Doyle, E.L., Schmidt, C., Zhang, F., Hummel, A., Bogdanove, A.J. and Voytas, D.F. (2010). Targeting DNA double-strand breaks with TAL effector nucleases. Genetics:186, 757-761.

Moscou, M.J. and Bogdanove, A.J. (2009). A simple cipher governs DNA recognition by TAL effectors. Science 326 (5959):1501 (or pdf - no subscription required)

See also
About the Cover, Science 326 (5959)
Voytas, D.J. and Joung, J.K. (2009) DNA binding made easy. Science 326 (5959):1491-1492.
Pennisi, E. (2010). Sowing the seeds for the ideal crop. Science 327, 802-803.

Lu, H., Patil, P., Van Sluys, M.-A., White, F.F., Ryan, R.P., Dow, J.M., Rabinowicz, P., Salzberg, S.L., Leach, J.E., Sonti, R., Brendel, V., and Bogdanove, A.J. (2008). Acquisition and evolution of plant pathogenesis-associated gene clusters and candidate determinants of tissue-specificity in Xanthomonas. PLoS ONE 3:e3828.

Seo, Y.-S., Sriariyanun, M., Wang, L., Pfeiff, J., Phetsom, J., Lin, Y., Jung, K.-H., Chou, H.-H., Bogdanove, A.J., and Ronald, P.C. (2008). A two-genome microarray for the rice pathogens Xanthomonas oryzae pv. oryzae and X. oryzae pv. oryzicola and its use in the discovery of a difference in their regulation of hrp genes. BMC Microbiology 8:99.

Salzberg, S.L., Sommer, D.D., Schatz, M.C., Phillippy, A.M., Rabinowicz, P.D., Tsuge, S., Furutani, A., Ochiai, H., Delcher, A.L., Kelley, D., Madupu, R., Puiu, D., Radune, D., Shumway, M., Trapnell, C., Aparna, G., Jha, G., Pandey, A., Patil, P.B., Ishihara, H., Meyer, D.F., Szurek, B., Verdier, V., Koebnik, R., Dow, J.M., Ryan, R.P., Hirata, H., Tsuyumu, S., Lee, S.W., Ronald, P.C., Sonti, R.V., Van Sluys, M.-A., Leach, J.E., White, F.F., and Bogdanove, A.J. (2008) Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A. BMC Genomics 9:204.

See also Petty, N.K. (2008). Genome watch: Crops and robbers. Nat Rev Micro 6, 716-717.

Patil, P.B., Bogdanove, A.J., and Sonti, R.V. (2007) The role of horizontal transfer in the evolution of a highly variable lipopolysaccharide biosynthesis locus in xanthomonads that infect rice, citrus and crucifers. BMC Evol. Biol. 7:243.

Wang, L. Makino, S., Subedee, A. and Bogdanove, A.J. (2007) Novel candidate virulence factors in rice pathogen Xanthomonas oryzae pv. oryzicola revealed by mutational analysis. Applied Env. Microbiol. 73:8023-8027).

Nissinen, R. M, Ytterberg, A. J., Bogdanove, A. J., van Wijk, K. J., and Beer, S. V. (2007) Analyses of the secretomes of Erwinia amylovora and selected hrp mutants reveal novel type III secreted proteins and an effect of HrpJ on extracellular harpin levels. Molecular Plant Pathol.8:55-67.

Wang, L., Eggenberger, A.L., Hill, J., and Bogdanove, A.J. (2006). Pseudomonas syringae effector avrB confers soybean cultivar-specific avirulence on Soybean mosaic virus adapted for transgene expression but effector avrPto does not. Mol. Plant-Microbe Interact.19:304-312.

Makino, S., Sugio, A., White, F.F., and Bogdanove, A.J. (2006). Inhibition of resistance gene mediated defense in rice by Xanthomonas oryzae pv. oryzicola. Mol. Plant-Microbe Interact.19:240-249.

Nino-Liu, D.O., Darnielle, L., and Bogdanove, A.J. (2005) A simple method of mass inoculation of rice effective for both pathovars of Xanthomonas oryzae, and the construction of comparable sets of host cDNA libraries spanning early stages of bacterial leaf blight and bacterial leaf streak. J. Phytopathol. 153:500-504.

Bogdanove, A.J. and Martin, G.B. (2000) AvrPto-dependent Pto-interacting proteins and AvrPto-interacting proteins in tomato. Proc. Natl. Acad. Sci. 97:8836-8840.

Bogdanove, A.J., Bauer, D.W., and Beer, S.V. (1998) Erwinia amylovora secretes DspE, a pathogenicity factor and functional AvrE homolog, through the Hrp (type III secretion) pathway. J. Bacteriol. 180:2244-2247.

Bogdanove, A.J., Kim, J.F., Wei Z.-M., Kolchinsky, P., Charkowski, A.O., Conlin, A.K., Collmer, A., and Beer, S.V. (1998) Homology and functional similarity of an hrp-linked pathogenicity locus, dspEF, of Erwinia amylovora and the avirulence locus avrE of Pseudomonas syringae pathovar tomato. Proc. Natl. Acad. Sci. 95:1325-1330.

Bogdanove, A.J., Beer, S.V., Bonas, U., Boucher, C.A., Collmer, A., Coplin, D.L., Cornelis, G.R., Huang, H.-C., Hutcheson, S.W., Panopoulos, N.J., and Van Gijsegem, F. (1996) Unified nomenclature for broadly conserved hrp genes of phytopathogenic bacteria. Mol. Microbiol 20:681-683.

Bogdanove, A.J., Wei, Z.-M., Zhao, L., and Beer, S.V. (1996) Erwinia amylovora secretes harpin via a Type III pathway and contains a homolog of yopN of Yersinia spp. J. Bacteriol. 178:1720-1730.

Bauer, D.W., Bogdanove, A.J., Beer, S.V., and Collmer. A. (1994) Erwinia chrysanthemi hrp genes and their involvement in soft rot pathogenesis and elicitation of the hypersensitive response. Mol. Plant-Microbe Interact. 7:573-581.

 

Review articles

Bogdanove, A.J. and Voytas, D.J. (2011) TAL effectors: customizable proteins for DNA targeting. Science 33:1843-1846 html or pdf (no subscription required)

Ryan, R.P., Vorhölter, F.-J., Potnis, N., Jones, J.B., Van Sluys, M.-A., Bogdanove, A.J., and Dow, J.M. (2011). Pathogenomics of Xanthomonas: understanding bacterial–plant interactions. Nat. Rev. Microbiol. 9:344-355.

Bogdanove, A.J., Schornack, S. and Lahaye, T. (2010). TAL effectors: finding plant genes for disease and defense. Curr. Opin. Plant Biol.13:394-401.

Ryan, R.P., Koebnik, R., Szurek, B., Boureau, T., Bernal, A., Bogdanove, A.J., and Dow, J.M. (2009). Passing GO (gene ontology) in plant pathogen biology: a report from the Xanthomonas Genomics Conference. Cell. Microbiol. 11:1689-1696.

Wise, R.P., Moscou, M.J., Bogdanove, A.J., and Whitham, S.A. (2007). Transcript profiling in host-pathogen interactions. Ann. Rev. Phytopathol. 45:329-369.

Niño-Liu, D. O., Ronald, P. C., and Bogdanove, A. J. (2006) Xanthomonas oryzae pathovars: model pathogens of a model crop. Molecular Plant Pathol. 7:303-324.

Martin, G.B., Bogdanove, A.J., Sessa, G. (2003) Understanding the functions of plant disease resistance proteins. Annu. Rev. Plant Biol. 54: 23-61.

Bogdanove, A.J. (2002) Pto update: recent progress on an ancient plant defense signaling pathway. Molecular Plant Pathol. 3: 283-288.

Bogdanove, A.J. (2002) Protein-protein interactions in pathogen recognition by plants. Plant Mol. Biol. 50:981-989.

 

Book chapters and conference proceedings

Niño-Liu, D.O., Bancroft, T., Rajaram, M.L., Moscou, M.J., Caldo, R., Schmidt, C.L., Dorman, K.S., Yang,B. Patil, P.B., Szurek,B., Koebnik, R., Van Sluys, M.-A., Leach, J.E., Salzberg, S.L., White, F.F., Nettleton, D., Wise, R.P., and Bogdanove, A.J. (2011). Targeting of the rice transcriptome by TAL effectors of Xanthomonas oryzae. Proceedings of the 10th Japan-US Seminar, Genome-Enabled Integration of Research in Plant Pathogen Systems, Oregon State University, Corvallis, Oregon, January 24-28, 2010. Wolpert, T., Shiraishi, T., Collmer, A.,Akimitsu, K., Glazebrook, J., eds. (St. Paul, MN, APS Press) pp. 193-206.

Wang, L., Mahama, A., Darnielle, L., Eggenberger, A., Hill, J., and Bogdanove, A.J. (2005) Recognition of the bacterial effector protein AvrPto in soybean - a case of HR-independent resistance, in Genomic and Genetic Analysis of Plant Parasitism and Defense, Proceedings of the 9th Japan-US Seminar on Plant-Pathogen Interactions, Shizuoka, Japan, November 1-7, 2003 (St. Paul, MN: APS Press) pp. 103-114.

Devarenne, T.P., Riely, B.K., Lin, N.-C., Kim, Y.-J., Cohn, J., Mysore, K., Charkravarthy, S., Bogdanove, A.J., D'Ascenzo, M., Debbie, P., Tuori, B., Martin, G.B. (2002) Recognition of Pseudomonas effector proteins by tomato and profiling of plant gene expression changes that occur during plant-pathogen interactions, in Biology of Plant-Microbe Interactions, Vol. 3: Proceedings of the 10th International Symposium on Molecular Plant-Microbe Interactions, Madison, Wisconsin, USA, July 10-14, 2001 (St. Paul, MN: IS-MPMI) pp. 58-63.

Bogdanove, A.J., Gu, Y.-Q., Nakajima, Y. , Sessa, G. , and Martin, G.B. (1999) Early events in AvrPto/Pto-mediated activation of defense responses,   in Biology of Plant-Microbe Interactions: Proceedings of the 9th International Symposium on Molecular Plant-Microbe Interactions, Amsterdam, The Netherlands, July 25-30, 1999 (St. Paul, MN: IS-MPMI) pp. 238-242.

Bogdanove, A.J., Kim, J.F., and Beer, S.V. (1999) Disease-specific genes of Erwinia amylovora: keys to understanding pathogenesis and potential targets for disease control in Fire Blight and Its Causative Agent, Erwinia amylovora. J. L. Vanneste, ed. (Wallingford, UK:CAB International) pp. 163-177.

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Websites and web-based resources

Doyle, E.L., Mistry, D., Van Dyke, J., and Bogdanove, A.J. (2010 onward). “TAL Effector Nucleotide Targeter” at boglabx.plp.iastate.edu/TALENT.

Darnielle, L., Vogel, K., and Bogdanove, A.J. (2002 onward) "Functional genomics of rice susceptibility to bacterial pathogens" at www.public.iastate.edu/~ajbog/nsf.

Vogel, K., Darnielle, L., and Bogdanove, A.J. (2001 onward) "Bogdanove laboratory" at www.public.iastate.edu/~ajbog.

 


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