|
|
March
18, 2009
|
Boyce
Thompson Institute |
Molecular
Plant Pathology |
Postdoc.,
1998-2000 |
|
Purdue
University |
Agronomy |
Postdoc.,
1997-1998 |
|
Cornell
University |
Plant
Pathology |
Ph.D.,
1997 |
|
Yale
University |
Biology,
cum laude |
B.S.,
1987 |
Positions held
|
2006-present Iowa
State University |
Associate
Professor, Dept. of Plant Pathology, also Bioinformatics and Computational
Biology, Interdepartmental Genetics, Interdepartmental Microbiology,
Interdepartmental Plant Biology, Molecular Cell and Developmental Biology,
and Plant Sciences Institute Center for Plant Responses to Environmental
Stress Chair,
Interdepartmental Microbiology Graduate Program Member,
Biotechnology Council |
|
2000-2006 Iowa
State University |
Assistant
Professor, Dept. of Plant Pathology, also Interdepartmental Genetics,
Bioinformatics and Computational Biology, Molecular Cell and Developmental
Biology, Interdepartmental Microbiology, and Plant Sciences Institute Center
for Plant Responses to Environmental Stress |
|
1997-1999 |
USDA-NRI
Postdoctoral Research Fellow |
|
1991-1994 |
USDA National
Needs Graduate Research Fellow |
|
1987-1991 |
Instructor
of English as a Second Language, Japan |
Molecular mechanisms of
bacterial plant pathogenesis and plant defense: bacterial type III secretion,
plant signal transduction, microbial and plant biotechnology for disease
control.
Lu, H., Patil, P., Van Sluys,
M.-A., White, F.F., Ryan, R.P., Dow, J.M., Rabinowicz, P., Salzberg, S.L.,
Leach, J.E., Sonti, R., Brendel, V., and Bogdanove, A.J. (2008). Acquisition and
evolution of plant pathogenesis-associated gene clusters and candidate
determinants of tissue-specificity in Xanthomonas. PLoS ONE 3:e3828.
Seo, Y.-S., Sriariyanun, M.,
Wang, L., Pfeiff, J., Phetsom, J., Lin, Y., Jung, K.-H., Chou, H.-H., Bogdanove, A.J.,
and Ronald, P.C. (2008). A two-genome microarray for the rice pathogens Xanthomonas
oryzae pv. oryzae and X. oryzae pv. oryzicola and its use in the discovery of a
difference in their regulation of hrp genes. BMC Microbiology 8:99.
Salzberg, S.L., Sommer, D.D.,
Schatz, M.C., Phillippy, A.M., Rabinowicz, P.D., Tsuge, S., Furutani, A.,
Ochiai, H., Delcher, A.L., Kelley, D., Madupu, R., Puiu, D., Radune, D.,
Shumway, M., Trapnell, C., Aparna, G., Jha, G., Pandey, A., Patil, P.B.,
Ishihara, H., Meyer, D.F., Szurek, B., Verdier, V., Koebnik, R., Dow, J.M.,
Ryan, R.P., Hirata, H., Tsuyumu, S., Lee, S.W., Ronald, P.C., Sonti, R.V., Van
Sluys, M.-A., Leach, J.E., White, F.F., and Bogdanove, A.J. (2008). Genome sequence
and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A.
BMC Genomics 9:204.
Patil, P.B., Bogdanove, A.J.,
and Sonti, R.V. (2007). The role of horizontal transfer in the evolution of a
highly variable lipopolysaccharide biosynthesis locus in xanthomonads that
infect rice, citrus and crucifers. BMC Evol. Biol. 7:243.
Wang, L. Makino, S., Subedee, A.
and Bogdanove,
A.J. (2007) Novel candidate virulence factors in rice pathogen Xanthomonas
oryzae pv. oryzicola revealed by mutational analysis. Applied Env. Microbiol.
73:8023-8027.
Nissinen, R.M, Ytterberg, A.J., Bogdanove, A.J.,
van Wijk, K.J., and Beer, S.V. (2007) Analyses of the secretomes of Erwinia
amylovora and selected hrp mutants reveal novel type III secreted proteins and
an effect of HrpJ on extracellular harpin levels. Molecular Plant
Pathol. 8:55-67.
Wang, L., Eggenberger, A.L.,
Hill, J., and Bogdanove,
A.J. (2006). Pseudomonas syringae effector avrB confers soybean
cultivar-specific avirulence on Soybean mosaic virus adapted for transgene
expression but effector avrPto does not. Mol. Plant-Microbe
Interact.19:304-312.
Makino, S., Sugio, A., White,
F.F., and Bogdanove,
A.J. (2006). Inhibition of resistance gene mediated defense in rice by
Xanthomonas oryzae pv. oryzicola. Mol. Plant-Microbe
Interact.19:240-249.
Nino-Liu, D.O., Darnielle, L., and Bogdanove,
A.J. (2005). A simple method of mass inoculation of rice effective for both
pathovars of Xanthomonas
oryzae, and the construction of comparable sets of host cDNA libraries
spanning early stages of bacterial leaf blight and bacterial leaf streak. J. Phytopathol. 153, 500-504.
Bogdanove, A.J. and Martin, G.B.
(2000). AvrPto-dependent Pto-interacting proteins and AvrPto-interacting
proteins in tomato. Proc. Natl. Acad. Sci. 97: 8836-8840.
Bogdanove, A.J., Bauer, D.W., and
Beer, S.V. (1998). Erwinia amylovora secretes DspE, a pathogenicity factor and
functional AvrE homolog, through the Hrp (type III secretion). pathway. J.
Bacteriol. 180:2244-2247.
Bogdanove, A.J., Kim, J.F., Wei
Z.-M., Kolchinsky, P., Charkowski, A.O., Conlin, A.K., Collmer, A., and Beer,
S.V. (1998). Homology and functional similarity of an hrp-linked pathogenicity locus, dspEF, of Erwinia amylovora and the avirulence
locus avrE
of Pseudomonas
syringae pathovar tomato. Proc. Natl. Acad. Sci. 95:
1325-1330.
Bogdanove, A.J., Beer, S.V., Bonas, U., Boucher,
C.A., Collmer, A., Coplin, D.L., Cornelis, G.R., Huang, H.-C., Hutcheson, S.W.,
Panopoulos, N.J., and Van Gijsegem, F. (1996). Unified nomenclature for broadly
conserved hrp
genes of phytopathogenic bacteria. Mol. Microbiol.
20:681-683.
Bogdanove, A.J., Wei, Z.-M., Zhao,
L., and Beer, S.V. (1996). Erwinia amylovora secretes harpin via a Type III pathway and
contains a homolog of yopN of Yersinia spp. J. Bacteriol. 178:1720-1730.
Bauer, D.W., Bogdanove, A.J.,
Beer, S.V., and Collmer. A. (1994). Erwinia chrysanthemi hrp genes and their
involvement in soft
rot pathogenesis and elicitation of the hypersensitive response. Mol.
Plant-Microbe Interact. 7:573-581.
Meyer, D.F., and Bogdanove, A.J. (2008). Genomics-driven
advances in Xanthomonas
biology. In
Plant Pathogenic Bacteria: Genomics
and Molecular Biology, R.W. Jackson, ed. (Norwich, UK, Horizon Scientific
Press), pp. 147-161.
Wise, R.P., Moscou, M.J., Bogdanove, A.J., and Whitham, S.A.
(2007). Transcript profiling in host-pathogen interactions. Ann. Rev.
Phytopathol. 45:329-369.
Nino-Liu, D. O., Ronald, P. C., and Bogdanove, A. J. (2006) Xanthomonas oryzae pathovars: model pathogens
of a model crop. Molecular Plant
Pathol. 7:303-324.
Wang, L., Mahama, A., Darnielle, L.,
Eggenberger, A., Hill, J., and Bogdanove, A.J. (2005). Recognition of the
bacterial effector protein AvrPto in soybean Ü a case of HR-independent
resistance, pp. 103-114 in Genomic and Genetic Analysis of Plant Parasitism and Defense,
Proceedings of the 9th Japan-US Seminar on Plant-Pathogen
Interactions, Shizuoka, Japan, November 1-7, 2003, APS Press, St. Paul.
Martin, G.B., Bogdanove, A.J., Sessa, G. (2003).
Understanding the functions of plant disease resistance proteins. Annu. Rev.
Plant Biol. 54: 23-61.
Bogdanove, A.J. (2002). Pto update: recent progress on an ancient
plant defense signaling pathway. Molecular Plant Pathol. 3: 283-288.
Bogdanove, A.J. (2002).
Protein-protein interactions in pathogen recognition by plants. Plant Mol.
Biol. 50:981-989.
Devarenne, T.P., Riely, B.K., Lin, N.-C., Kim,
Y.-J., Cohn, J., Mysore, K., Charkravarthy, S., Bogdanove, A.J., DÕAscenzo, M., Debbie,
P., Tuori, B., Martin, G.B. (2002). Recognition of Pseudomonas effector proteins by tomato
and profiling of plant gene expression changes that occur during plant-pathogen
interactions, pp. 58-63 in Biology of Plant-Microbe Interactions, Vol. 3: Proceedings of
the 10th International Symposium on Molecular Plant-Microbe
Interactions, Madison, Wisconsin, USA, July 10-14, 2001. IS-MPMI, St. Paul, MN.
Bogdanove, A.J., Gu, Y.-Q.,
Nakajima, Y. , Sessa, G. , and Martin, G.B. (1999). Early events in
AvrPto/Pto-mediated activation of defense responses, pp. 238-242 in Biology of Plant-Microbe Interactions:
Proceedings of the 9th International Symposium on Molecular
Plant-Microbe Interactions, Amsterdam, The Netherlands, July 25-30, 1999.
IS-MPMI, St. Paul, MN.
Bogdanove, A.J., Kim, J.F., and
Beer, S.V. (1999). Disease-specific genes of Erwinia amylovora: keys to understanding pathogenesis and potential
targets for disease control pp. 163-177 in Fire Blight and Its Causative Agent, Erwinia amylovora.
J. L. Vanneste (ed.). CAB International, Wallingford, UK.
Bogdanove, A.J., and Dennis, D. (2009 onward). ÒXanthomonas Genomics Conference 2009Ó at www.plantpath.iastate.edu/xgc2009
Westgate, M., Vogel, K.,
Darnielle, L., and Bogdanove, A.J. (under development). Xanthomonas
Genomics Resource at http://www.plantpath.iastate.edu/xgr.
Darnielle, L.,
Vogel, K., and Bogdanove,
A.J. (2002 onward). Functional genomics of rice susceptibility to bacterial pathogens
at www.public.iastate.edu/~ajbog/nsf.
Vogel, K.,
Darnielle, L., and Bogdanove, A.J. (2001 onward). Bogdanove laboratory at www.public.iastate.edu/~ajbog.
Paso Robles Vintners
Association, Paso Robles, CA, January 2009
Dept. of Plant Pathology, UC
Davis, November 2008
Martin Luther University Halle-Wittenberg,
Institute for Genetics, May 2008.
Prokagenome 2007: 3rd
European Conference on Prokaryotic Genomics, Goettingen, Germany, October 2007.
2nd International
Conference on Bacterial Blight of Rice, Nanjing, China, September 2007.
University of Wisconsin,
Madison, Department of Plant Pathology, September 2007.
USDA-NSF Microbial Genome
Sequencing Program Workshop, Plant and Animal Genome Conference, San Diego, CA,
January 2007.
2nd International
Workshop on Xanthomonas:
Genomics, Bielefeld, Germany, October 2005.
American Microbiology Society,
65th annual meeting of the North Central Branch, Ames, IA, September
2005.
University of Minnesota,
Department of Plant Pathology seminar mini-series on plant resistance genes,
October 2004.
1st International
Conference on Bacterial Blight of Rice, Tsukuba, Japan, March 2004.
9th Japan-US seminar
on Plant-Pathogen Interactions, Genomic and Genetic Analysis of Plant
Parasitism and Defense, Shizuoka, Japan, November 2003.
Iowa Soybean Promotion Board
Meeting, Ames, IA, February 2002.
52nd Harden
Conference, Signalling in Plants, Wye, Kent UK, September, 2000.
Invitation
declined:
International Plant Protection Congress, Beijing, PRC, May 2004.
Interdepartmental
Graduate Program in Genetics, September, 2008
Interdepartmental
Graduate Program in Plant Biology, September, 2008
Genetics
Cell and Developmental Biology, September 2007.
Interdepartmental Graduate
Programs recruiting weekend, February 2005.
Plant Sciences Institute visit
of World Food Prize laureate Longing Yuan, October 2004.
Center for Plant Responses to
Environmental Stress seminar series, October 2004.
Bioinformatics and Computational
Biology faculty seminar series, October 2004.
Department of Plant Pathology,
April 2003.
Bioinformatics and Computational
Biology faculty seminar series, November 2002.
Molecular Cell and Developmental
Biology Program, May 2001.
Department of Microbiology,
March, 2001.
Interdepartmental Genetics,
November, 2000.
NSF Plant Genome Research
Program (2008-2012). GEPR: Transcription profiling and functional analyses of
bacterial disease susceptibility pathways of rice. Co-PI.
USDA-CSREES NRI, 51.8 Microbial
Associations with Plants (2008-2011). Role of lipopolysaccharide O-chain in
type III secretion, and effector-mediated host defense inhibition in bacterial
leaf streak of rice. PI.
NSF Young Investigator Award in
Plant Genome Research, supplement (2005). Functional genomics of rice susceptibility
to bacterial diseases: use of the 45K rice oligo microarray. PI
USDA-NSF Microbial Genome
Sequencing Program (2004-2006). Xanthomonas pathovars enabling a broad
comparative genomics approach to understanding vascular and non-vascular
bacterial diseases of dicots and monocots. PI (co-PIs at Colorado State Univ.,
Kansas State Univ., and The Institute for Genome Research).
NSF Young Investigator Award in
Plant Genome Research (2002-2008). Functional genomics of rice susceptibility
to bacterial diseases. PI.
Iowa State University Special
Research Initiative Grant (2000). Sequencing the Xanthomonas oryzae genome at
Iowa State: a feasibility study. PI.
Iowa State University Plant
Sciences Institute Grants Program (2001-2003). Interaction specificity of related bacterial avirulence
proteins and their cognate receptors in soybean and tomato. PI.
USDA-NRIGCP Postdoctoral
Fellowship (1997-1999). Role of AvrPto-Pto binding in Activation of Pto-mediated
Disease Resistance. PI.
NSF/Japan Ministry of Education
Young Researchers' Summer Program (1996).
USDA National Needs Graduate
Fellowship (1991-1994).
Bauer, D.W., Beer, S.V., Bogdanove, A.J.,
Collmer, A., and Ham, J.H. (2003). Recombinant constructs and systems for
secretion of proteins via type III secretion systems. Patent No. US 6596509.
Bogdanove, A.J., Kim, J.F., Wei, Z.-M., and
Beer, S.V. (2001). Hypersensitive response elicitor from Erwinia amylovora, its use, and encoding
gene. Patent No. US 6228644.
Plant Pathology 692. Molecular
Biology of Plant-Microbe Interactions. 3 cr.
Genetics 692.
Seminar in the Conceptual Foundations of Genetics. 1 cr.
Science Bound
program of ISU
(2008). As a faculty volunteer for this program to increase the involvement of
disadvantaged and/or underrepresented students in science, I organized
presentations by three graduate students from underrepresented groups regarding
their reasons for choosing a scientific career, led a discussion on careers in
science, and provided a hands-on activity in plant pathology and hypothesis
testing for central Iowa eighth graders. Participation: 26 students, 5
teachers, administrators, and adult mentors.
Plants Get Sick
Too
(2001-2005). I developed and have conducted yearly this program for Science
Night at Roosevelt Elementary School, Ames, IA. The program consists of
demonstrations and activities for students and their families focusing on
hypothesis testing and plant pathology. Participation: 80-100.
Science Bound
program of ISU
(2004). As a faculty volunteer for this program to increase the involvement of
disadvantaged and/or underrepresented students in science, I organized
presentations by two graduate students and a postdoctoral researcher of color
regarding reasons for choosing a scientific career, led a general discussion on
being a scientist, and provided a hands-on exercise in plant pathology for
central Iowa high school freshmen. Participation: 24.
ISU College of Ag
High School Student Workshop (Science in Ag Day), "Biosecurity
Investigationsî
(2003). With another faculty member, I conducted an hour-long introduction to
crop biosecurity for central Iowa high school seniors. Participation: 20.
Romania Young Scientist
to Scientist Program, ISU
(2004). I hosted a young Romanian scientist for a one month research experience
in my laboratory as part of this international outreach program funded by USAID
and USDA and administered by the ISU Global Agricultural Programs Office.
International Society for
Molecular Plant Microbe Interactions. Co-chair of ad hoc committee to update membership
brochure (2001).
American Phytopathological
Society. Bacteriology committee (2004-2005).
American Society for
Microbiology.
American Society for Plant
Biology.