General References Kirk
| Top | Pattern | Point
| Prairie | Geostats | Neighborhood
|
Pattern<-->Process
Lecture specific:
Edelstein-Keshet, L. 1988. Mathematical Models in Biology. Random
House, New York, NY.
• Chapter 2 provides a good introduction to the complex
non-linear dynamics emanating from simple difference
equations, such as the logistic .
Hastings, A. 1993. Complex interactions between dispersal and
dynamics: lessons from coupled logistic equations. Ecology
74(3):1362-1372.
• Offers some insights into the impact of adding a very
simple form of spatial subdivision into the logistic
model. Although the logistic is not very good at
depicting the complex dynamics occuring in naturally
occuring population an examination of its dynamics
can yield some interesting insights into the
complexities of population dynamics. ( A cautionary
note: this paper is probably not a good starting
point for the mathematically faint-hearted.)
May, R. 1976. Simple Mathematical Models with very complicated
dynamics. Nature 261:459-467.
• A more thorough explication of the dynamics lurking
behind the logistic than is to be found in Edelstein-
Keshet (1988).
Pianka, E. 1978. Evolutionary Ecology (Second ed.). Harper &
Row, Publishers, New York, NY.
• Presents a discussion of relationship between the
distribution of vegetation types and climate, among
other things.
Silvertown, J., S. Holtier, J. Johnson, and P. Dale. 1992.
Cellular automaton models of interspecific competition for
space the effect of pattern on process.
Journal of Ecology 80:527-534.
• An interesting, but somewhat naïve, modeling study
that explores the impact of varying the initial
pattern of vegetation structure on competitive
dynamics and pattern evolution.
General:
Adams, E. S. and W. R. Tschinkel. 1995. Spatial dynamics of colony
interactions in young populations of the fire ant Solenopsis invicta.
Oecologia 102:156-163.
Addicot, J. F., J. M. Aho, M. F. Antolin, D. K. Padilla, J. S.
Richardson and D. A. Soluk. 1987. Ecological neighborhoods: scaling
environmental patterns. Oikos 49:340-346.
Casas, J. 1990. Multidimensional host distribution and nonrandom
parasitism: a case study and a stochastic model. Ecology
71:1893-1903.
Chapleau, F., P. H. Johansen and M. Williamson. 1988. The distinction
between pattern and process in evolutionary biology: the use and
abuse of the term "strategy". Oikos 53:136-138.
Clements, F. E. 1936. Nature and structure of the climax. The Journal
of Ecology 24:252-284.
Cowles, H. C. 1899. The ecological relations of the vegetation on sand
dunes of Lake Michigan. The Botanical Gazette 27:95-
117,167-202,281-308,361-391.
Cox, G. W. 1990. Soil mining by pocket gophers along topographic
gradients in a mima moundfield. Ecology 71:837-843.
Fisher, M. 1993. Fine-scale distributions of tropical animal mounds: a
revised statistical analysis. Journal of Tropical Ecology
9:339-348.
Ford and Renshaw. 1984. The interpretation of process from pattern using
two-dimensional spectral analysis. Vegetatio 56:113-
123.
Gleason, H. A. 1920. Some applications of the quadrat method.
Bulletin of the Torrey Botanical Club 47:21-33.
Gleason, H. A. 1926. The individualistic concept of the plant
association. Bulletin of the Torrey Botanical Club
53:7-26.
Horne, J. K. and D. C. Schneider. 1994. Analysis of scale-dependent
processes with dimensionless ratios. Oikos; acta oecologica
scandinavica 70:201.
Hutchinson, G. E. 1953. The concept of pattern in ecology.
Proceedings of the National Academy of Sciences (USA)
105:1-12.
Kenkel, N. C. 1993. Modeling Markovian dependence in populations of
Aralia nudicaulise. Ecology 74:1700-1706.
Krummel, J., R. Gardner, G. Sugihara, R. O'Neill and P. Coleman. 1987.
Landscape patterns in a disturbed environment. Oikos
48:321-324.
Levin, S. A., A. Morin and T. H. Powell. Drft. Patterns and processes in
the distribution and dynamics of antartic krill.
Li, H. and J. F. Reynolds. 1994. A simulation experiment to quantify
spatial heterogeneity in categorical maps. Ecology
75:2446-2455.
McAuliffe, J. R. 1994. Landscape evolution, soil formation, and
ecological patterns and processes in Sonoran Desert Bajadas.
Ecological Monographs 64:111-148.
Moloney, K., A. Morin and S. Levin. 1991. Interpreting ecological
patterns generated thorugh simple stochastic processes. Landscape
Ecology 5:163-174.
Navas, M.-L. and M. Goulard. 1991. Spatial pattern of a clonal perennial
weed, Rubia peregrina (Rubiaceae) in vineyards of Southern France.
Journal of Applied Ecology 28:1118-1129.
Overpeck, J., P. Barlein and I. T. Webb. 1991. Potential magnitude of
future vegetation change in Eastern North America: comparisons with
the past. Science 254:692-695.
Peterson, C. J. and E. R. Squiers. 1995. An unexpected change in spatial
pattern across 10 years in an aspenÑwhite-pine forest. Journal of
Ecology 83:847-855.
Ripley, B. D. 1976. The sceond-order analysis of stationary point
processes. Journal of Applied Probability 13:255-266.
Rowlingson, B. S. and P. J. Diggle. 1993. SPLANCS: spatial point pattern
analysis code in s-plus. Computers and Geosciences
19:627-655.
Ruess, R. W. and S. W. Seagle. 1994. Landscape patterns in soil
microbial processes in the Serengti National Park, Tanzania.
Ecology 75:892-904.
Silvertown, J., S. Holtier, J. Johnson and P. Dale. 1992. Cellular
automaton models of interspecific competition for space Ñ the effect
of pattern on process. Journal of Ecology 80:527-534.
Slowinski, J. B. and C. Guyer. 1989. Testing the stochasticity of
patterns of organismal diversity: an improved null model. American
Naturalist 134:907-921.
Turner, M. G. 1989. Landscape Ecology: the effect of pattern on process.
Annual Review of Ecology and Systematics 20:171-198.
Watt, A. S. 1947. Pattern and process in the plant community. Journal
of Ecology 35:1-22.
Wu, J. and S. A. Levin. 1994. A spatial patch dynamic modeling approach
to pattern and process in an annual grassland. Ecological
Monographs 64:447-464.
| Top | Pattern | Point
| Prairie | Geostats | Neighborhood
|
Point Processes
Adams, E. S. and W. R. Tschinkel. 1995. Spatial dynamics of colony
interactions in young populations of the fire ant Solenopsis
invicta. Oecologia 102:156-163.
Agterberg, F. P. 1994. Fortan program for the analysis of point patterns
with correction for edge effects. Computers and Geosciences
20:229-245.
Casas, J. 1990. Multidimensional host distribution and nonrandom
parasitism: a case study and a stochastic model. Ecology
71:1893-1903.
Cressie, N. 1991. Statistics for spatial data . Wiley-
Interscience. New York, NY.
Fisher, M. 1993. Fine-scale distributions of tropical animal mounds: a
revised statistical analysis. Journal of Tropical Ecology
9:339-348.
Gavrikov, V. and D. Stoyan. 1995. The use of marked point processes in
ecological and environmental studies. Ecological and
Environmental Statistics 2:331-344.
Haase, P. 1995. Spatial pattern analysis in ecology based on Ripley's K-
function: introduction and methods of edge correction. Journal
of Vegetation Science 6:575-582.
Kenkel, N. C. 1993. Modeling Markovian dependence in populations of
Aralia nudicaulise. Ecology 74:1700-1706.
Kenkel, N. C. 1988. Pattern of self-thinning in jack pine: testing the
random mortality hypothesis. Ecooogy 69:1017-1024.
Lawton, R. O. and F. E. Putz. 1988. Natural disturbance and gap-phase
regeneration in a wind-exposed tropical cloud forest. Ecology
69:764-777.
Peterson, C. J. and E. R. Squiers. 1995. An unexpected change in spatial
pattern across 10 years in an aspenÑwhite-pine forest. Journal
of Ecology 83:847-855.
Rebertus, A. J., G. B. Williamson and E. B. Moser. 1989. Fire-induced
changes in Quercus laevis spatial pattern in Florida sandhills.
Journal of Ecology 77:638-650.
Ripley, B. D. 1976. The sceond-order analysis of stationary point
processes. Journal of Applied Probability 13:255-
266.
Ripley, B. D. 1981. Spatial Statistics . John Wiley & Sons. New
York, NY.
Ripley, B. D. 1978. Spectral analysis and the analysis of pattern in
plant communities. Journal of Ecology 66:965-981.
Rowlingson, B. S. and P. J. Diggle. 1993. SPLANCS: spatial point pattern
analysis code in s-plus. Computers and Geosciences
19:627-655.
Venables, W. N. and B. D. Ripley. 1994. Modern Applied Statistics
with S-Plus . Springer-Verlag. New York.
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| Prairie | Geostats | Neighborhood
|
Prairie
Bendix, J. H. 1994. Area-restricted search by the plains pocket gopher
(Geomys bursarius) in tallgrass prairie habitat. Behavioral Ecology
4:318-324.
Benedix, J., J. H. and O. J. Reichman. MS. Patterns of disturbance
generated by pocket gophers (Geomys bursarius) on tallgrass praire.
Brotherson, J. D. 1982. Vegetation of the mima mounds of Kalsow Prairie,
Iowa. Great Basin Naturalist 42:246-261.
Brotherson, J. D. 1980. Zonation patterns in the potholes of Kalsow
Prairie, Iowa. Great Basin Naturalist 40:327-384.
Collins, S. L. 1992. Fire frequency and community heterogeneity in
tallgrass prairie vegetation. Ecology 73:2001-2006.
Collins, S. L. 1987. Interaction of disturbances in tallgrass prairie: a
field experiment. Ecology 68:1243-1250.
Collins, S. L. 1990. Patterns of community structure during succession
in tallgrass prairie. Bull. Torrey Bot. Club 117:397-
408.
Crist, T. O., D. S. Guertin, J. A. Weins and B. T. Milne. 1992. Animal
movement in heterogeneous landscapes: an experiment with Eleodes beetles
in shortgrass prairie. Functional Ecology 6:536-544.
Davis, Ritchie, Graf and Gregg. 1995. An experimental study of the
effects of shade, conspecific crowding, pocket gophers and surrounding
vegetation on survivorship, growth and reporduction in Penstemon
grandflorus. Amer. Midl. Nat. 134:237-244.
Glenn, S. M. and S. L. Collins. 1993. Experimental analysis of patch
dynamics in tallgrass prairie plant communities. Journal of
Vegetation Science 4:157-162.
Groffman, P. M., C. W. Rice and J. M. Tiedje. 1993. Denitrification in a
tallgrass prairie landscape. Ecology 74:855-862.
Hartnett, D., B. Hetrick, G. Wilson and D. Gibson. 1993. Mychorrhizal
influence on intra- and interspecific neighbor interactions among co-
occurring prairie grasses. Journal of Ecology 81:787-
795.
Howe, H. 1994. Managing species diversity in tallgrass prairie:
assumptions and implications. Conservation Biology 8:691-
704.
Howe, H. F. 1995. Succession and fire season in experimental prairie
plantings. Ecology 76:1917.
Knapp, A. K., J. Fahnestock, S. Hamburg, L. Statland, T. Seastedt and D.
Schimel. 1993. Landscape patterns in soil-plant water relations and
primary productivity in tallgrass prairie. Ecology74:549-560.
Paruelo, J. M. and W. K. Lauenroth. 1995. Regional patterns of
normalized difference vegetation index in North American shrublands and
grasslands. Ecology 76:1888.
Platt, W. J. 1975. The colonisation and formation of equilibrium plant
species associations on badger disturbances in a tall-grass prairie.
Ecological monographs 45:285-305.
Reichman, O. J. 1993. Distinct animal-generated edge effects in a
tallgrass prairie community. Ecology 74:1281-1284.
Reichman, O. J., J. H. Benedix, Jr. and T. R. Seastedt. 1993. Distinct
animal-generated edge effects in a tallgrass prairie community.
Ecology 74:1281-1285.
Seastedt, T. R. and A. K. Knapp. 1993. Consequences of nonequilibrium
resource availability across multiple time scales: the transient maxima
hypothesis. American Naturalist 141:621-633.
Williams, L. R., G. N. Cameron, S. R. Spencer, B. D. Eshelman and M. H.
Gregory. 1986. Experimental analysis of the effects of pocket gopher
mounds on Texas coastal prairie. Journal of Mammology
67:672-679.
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| Prairie | Geostats | Neighborhood
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Geostatistics
Almeida, A. S. and A. G. Journel. 1994. Joint Simulation of Multiple
Variables with a Markov-Type Coregionalization Model. Mathematical
geology 26:565.
Atkinson, P. M., R. Webster and P. J. Curran. 1992. Cokriging with ground-based
radiometry. Remote Sensing of Environment 41:45-60.
Biondini, M. E. and C. E. Grygiel. 1994. Landscape distribution of
organisms and the scaling of soil resources. The american naturalist
143:1026.
Brus, D. J. and J. J. de Gruijter. 1994. Estimation of Non-Ergodic
Variograms and Their Sampling Variance by Design-Based Sampling
Strategies. Mathematical geology 26:437.
Cordy, C. B. and C. M. Thompson. 1995. An Application of the
Deterministic Variogram to Design-Based Variance Estimation.
Mathematical geology 27:173.
Delay, F. and G. de Marsily. 1994. The Integral of the Semivariogram: A
Powerful Method for Adjusting the Semivariogram in Geostatistics.
Mathematical geology 26:301.
Deutsch, C. V. 1994. Kriging with Strings of Data. Mathematical
geology 26:623.
Deutsch, C. V. and A. G. Journel. 1992. GSLIB: Geostatistical
Software Library and User's Guide . Oxford University Press. Oxford.
Dietrich, C. R. and G. N. Newsam. 1995. Efficient Generation of
Conditional Simulations by Chebyshev Matrix Polynomial Approximations
to the Symmetric Square Root of the Covariance Matrix. Mathematical
geology 27:207.
Dowd, P. A. and C. Sarac. 1994. A Neural Network Approach to
Geostatistical Simulation. Mathematical geology 26:491.
Goovaerts, P. 1994. Comparative Performance of Indicator Algorithms for
Modeling Conditional Probability Distribution Functions.
Mathematical geology 26:389.
Gross, K. L., K. S. Pregitzer and A. J. Burton. 1995. Spatial variation
in nitrogen availability in three successional plant communities. The
journal of ecology 83:357.
Jackson, R. B. and M. Caldwell. 1993. The scale of nutrient
heterogeneity around individual plants and its quantification with
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Journel, A. G. and C. J. Huijbregts. 1978. Mining geostatistics .
Academic Press. London, England.
Kemp, W. P., T. M. Kalaris and W. F. Quimby. 1989. Rangeland
Grasshopper (Orthoptera: Acrididae) Spatial Variability: Macroscale
Population Assessment. Economic Entomology 82:1270-1276.
Kuuluvainen, T., T. Hokkanen, E. Jarvinen and T. Pukkala. 1993. Factors
related to seedling growth in boreal Scots pine stand: a spatial
analysis of a vegetation-soil system. Canadian Journal of Frest
Research 23:2101-2109.
North, C. P. and D. I. Halliwell. 1994. Bias in Estimating Fractal
Dimension with the Rescaled-Range (R/S) Technique. Mathematical
geology 26:531.
Palmer, M. 1988. Fractal geometry: a tool for describing spatial
patterns of plant communities. Vegetatio 75:91-102.
Robertson, G. P. 1987. Geostatistics in ecology: interpolating with
known variance. Ecology 68:744-748.
Robertson, G. P., M. A. Huston, F. C. Evans and J. M. Tiedje. 1988.
Spatial variability in a successional plant community: patterns of
nitrogen availability. Ecology 69:1517-1524.
Rossi, R., D. J. Mulla, A. G. Journel and E. H. Franz. 1992.
Geostatistical tools for modeling and interpreting ecological spatial
dependence. Ecological Monographs 62:277-314.
ver Hoef, J. M. and N. Cressie. 1993. Multivariable spatial prediction.
Mathematical Geology 25:219-240.
Ver Hoef, J. M., N. A. Cressie and D. C. Glenn-Lewin. 1993. Spatial
models for spatial statistics: some unification. Journal of
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Weber, D. D. and E. J. Englund. 1994. Evaluation and Comparison of
Spatial Interpolators II. Mathematical geology 26:589.
Wu, J. MS. A method for studying spatial patterns: the net-function
interpolation. Coenoses
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| Prairie | Geostats | Neighborhood
|
Neighborhood models
Addicot, J. F., J. M. Aho, M. F. Antolin, D. K. Padilla, J. S.
Richardson and D. A. Soluk. 1987. Ecological neighborhoods:
scaling environmental patterns. Oikos 49:340-346.
Armstrong, R. A. 1993. A comparison of index-based and pixel-based
neighborhood simulations of forest growth. Ecology
74:1707-1712.
Benjamin, L. R. 1993. Experimental descrimination between contrasting
models of neighborhood competition. Journal of Ecology
81:417-423.
Cain, M. L., S. W. Pacala and M. J. Fortin. 1995. Neighborhood models
of colonal growth in the white clover Trifolium repens.The
american naturalist 145:888.
Ellison, A. M., P. M. Dixon and J. Ngai. 1994. A null model for
neighborhood models of plant competitive interactions. Oikos :
a journal of ecology 71:225.
Firbank, L. G. and A. R. Watkinson. 1987. On the analysis of
competition at the level of the individual plant. Oecologia
71:308-317.
Goldberg, D. E. 1987. Neighborhood competition in an old-field plant
community. Ecology 68:1211-1223.
Gonzalez-Andujar, J. L. and J. N. Perry. 1995. Models for the
herbicidal control of the seed bank of Avena sterilis: the effects
of spatial and temporal heterogeneity and of dispersal. Journal
of Applied Ecology 32:578-587.
Mitha, R., J. L. Harper and J. Weiner. 1984. Growth and mortality of
individual plants as a function of "available area". Oecologia
62:57-60.
Murray, M. G. and R. Gerrard. 1984. Conflict in the neighborhood:
models where closer relatives are in direct competition.
Journal of Theoretical Biology 111:237-246.
Pacala, S. W. and J. A. Silander, Jr. 1990. Field tests of neighborhood
population dynamic models of two annual weed species.
Ecological Monographs 60:113-134.
Pacala, S. W. and J. A. Silander. 1985. Neighborhood models of plant
population dynamics I. Single-species models of annuals.
American Naturalist 125:385-411.
Panatastico-Caldas, M. and D. L. Venable. 1993. Competition in two
species of desert annuals along a topographic gradient. Ecology
74:2192-2203.
Reader, R. J., S. D. Wilson, J. W. Belcher and e. al. 1994. Plant
competition in relation to neighbor biomass: an intercontinental
study with Poa pratensis. Ecology 75:1753-1760.
Ribbens, E., J. A. S. Jr. and S. W. Pacala. 1994. Seedling recruitment
in forests: calibrating models to predict patterns of tree
seedling dispersion. Ecology 75:1794-1806.
Ryti, R. and T. Case. 1992. The role of neighborhood competition in the
spacing and diversity of ant communities. American Naturalist
139:355-374.
Silander, J. A., Jr. and S. W. Pacala. 1985. Neighborhood predictors of
plant performance. Oecologia 66:256-263.
Tremmel, D. C. and F. A. Bazzaz. 1995. Plant architecture and
allocation in different neighborhoods: implications for
competitive success. Ecology 76:262-271.
Weiner, J. 1984. Neighborhood interference amongst Pinus rigida
individuals. Journal of Ecology 72:183-195.
11/11/1996kmoloney@iastate.edu