
Office: |
449 Bessey Hall |
Phone: |
(515) 294-1749 |
Fax: |
(515) 294-1337 |
Email: |
mspaldin@iastate.edu |
Research in the Spalding lab focuses on the regulation of carbon metabolism and carbon partitioning in plants and other photosynthetic organisms. A primary interest is how photosynthetic cells monitor their carbon status and regulate genes involved in carbon assimilation in response to carbon availability. This is an example of metabolic regulation of gene expression, where products of metabolism act as signals in the regulation of gene expression. The lab is involved with projects in this area using Chlamydomonas, Synechocystis and higher plants.
Acclimation of the unicellular green alga Chlamydomonas and the cyanobacterium Synechocystis to changes in CO2 is being used as model systems for exploring metabolic regulation of gene expression in a photosynthetic eukaryote and a photosynthetic prokaryote, respectively. Each of these photosynthetic organisms exhibits a syndrome of adaptive responses to limiting CO2, including induction of an active CO2-concentrating mechanism (CCM). In Chlamydomonas we are dissecting both the signal transduction pathway for adaptation to changes in CO2 and the microalgal CCM using insertional mutagenesis to generate tagged mutants, which are being used to clone the key genes in the pathway. Identification of a key gene in the Chlamydomonas signal transduction pathway, Cia5, has provided the opportunity to identify genes/proteins that interact with it using both suppressor analysis and the yeast two-hybrid system. In Synechocystis, for which we have a completely sequenced genome available, several mutants deficient in acclimation to limiting CO2 concentrations have been identified by transposon mutagenesis and the defective genes identified. Interacting components are being identified using suppressor analysis.
In photosynthetic eukaryotes, the best characterized example of metabolic regulation of gene expression is the regulation of photosynthesis-related genes by carbohydrates. In collaboration with Steven Rodermel, metabolic regulation of gene expression in higher plants by sugars is being investigated using transgenic tobacco and Arabidopsis. This project includes investigation of carbohydrate accumulation as a signal regulating expression of photosynthesis-related genes and regulating the onset of leaf senescence.
In collaboration with Dr. Jaylin Jane (Food Science & Human Nutrition) we are trying to understand the mechanism of starch granule development using the cyanobacterium Synechocystis as a simple model system to investigate factors necessary for the formation of starch granules. Our hypothesis is that the branching structure of starch, along with an environment rich in lipids, are requisites for starch granule development, suggesting that it should be possible to generate granular starch in a cyanobacterium, which normally makes glycogen (a soluble glucan) rather than starch, by duplicating the branching characteristics of starch within intermembrane regions where glycogen normally is synthesized.
Another new research area involves two major collaborative projects investigating the factors controlling partitioning of carbon metabolites in developing soybean embryos. These projects utilize isogenic soybean lines that differ markedly in their oil and protein contents, and represent part of a larger, campus-wide effort to investigate the factors controlling carbon and nitrogen partitioning into oil versus protein in these isogenic lines. Involvement of the Spalding lab includes analysis, in collaboration with Mark Westgate (Agronomy), of changes in the proteome early in the development of soybean embryos in the isogenic lines, and application, in collaboration with Jackie Shanks (Chemical Engineering) and Mark Westgate, of a novel metabolic flux mapping technique, Metabolic Flux Ratio Analysis (METAFoR), to provide information about how the carbon flux through key steps in intermediary metabolism changes in developing soybean embryos across time, space or genotype. Metabolic Flux Ratio Analysis (METAFoR) combines NMR analysis of fractional 13C labeling of proteinogenic amino acids and metabolite balance models to estimate fluxes through the pathways of intermediary metabolism.
The Spalding lab also is working on another, somewhat unrelated project involving development of a mechanism for coordinated expression of multiple secreted proteins in transgenic plants. Preliminary results have shown promise that this mechanism may prove useful in the plant biotechnology industry.
updated January 2003